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libhdf5-gnu-mvapich2-hpc-1.10.8-5.2 RPM for i586

From OpenSuSE Tumbleweed for i586

Name: libhdf5-gnu-mvapich2-hpc Distribution: openSUSE Tumbleweed
Version: 1.10.8 Vendor: openSUSE
Release: 5.2 Build date: Wed Jun 15 05:29:25 2022
Group: System/Libraries Build host: lamb22
Size: 214 Source RPM: hdf5_1_10_8-gnu-mvapich2-hpc-1.10.8-5.2.src.rpm
Packager: https://bugs.opensuse.org
Url: https://www.hdfgroup.org/HDF5/
Summary: Dependency package for libhdf5_1_10_8-gnu-mvapich2-hpc
hdf5: Command-line programs for the HDF5 scientific data format
The package libhdf5-gnu-mvapich2-hpc provides the dependency to get binary package libhdf5_1_10_8-gnu-mvapich2-hpc.
When this package gets updated it installs the latest version of hdf5_1_10_8-gnu-mvapich2-hpc.

Provides

Requires

License

BSD-3-Clause

Changelog

* Wed May 04 2022 Egbert Eich <eich@suse.com>
  - Security Fix:
    Add configure option --disable-hltools to disable GIF tools as
    recommended in the 1.10.8 release:
    CVE-2018-17433 (bsc#1109565),
    CVE-2018-17436 (bsc#1109568),
    CVE-2020-10809 (bsc#1167404).
* Thu Apr 07 2022 Christoph Junghans <junghans@votca.org>
  - add hdf5-wrappers.patch from Fedora, so strip flags from
    wrappers and prefer shared linking
  - add missing zlib-devel devel dep
* Thu Mar 31 2022 Ben Greiner <code@bnavigator.de>
  - Add hdf5-1.10.8-pr1494-fix-release-check-version.patch
    * boo#1179521, boo#1196682, gh#HDFGroup/hdf5#1494
    * Avoids package crashes due to an overeager version check.
      Packages depending on the shared libraries are not being
      rebuilt in Factory after a patchlevel version bump of hdf5
      without SONAME changes.
* Wed Feb 16 2022 Atri Bhattacharya <badshah400@gmail.com>
  - Update to version 1.10.8:
    * Added new option to control the build of High-Level tools
    * Adds C++ Autotools configuration file for Intel
    * Adds C++ Autotools configuration file for PGI
    * Updates PGI C options
    * CMake will now run the shell script tests in test/ by default
    * Removed unused HDF5_ENABLE_HSIZET option from CMake
    * CMake no longer builds the C++ library by default
    * Removal of pre-VS2015 work-arounds
    * Add CMake variable HDF5_LIB_INFIX
    * Added a configure-time option to control certain compiler
      warnings
    * CMake option to build the HDF filter plugins project as an
      external project
    * Added a configure-time option to consider certain compiler
      warnings
    * Autotools and CMake target added to produce doxygen generated
      documentation
    * CMake option to build the HDF filter plugins project as an
      external project
    * Added CMake option to format source files
    * Change how the release part of version, in major.minor.release
      is checked
    * H5Gcreate1() now rejects size_hint parameters larger than
      UINT32_MAX
    * H5Pset_fapl_log() no longer crashes when passed an invalid
      fapl ID
    * Fixes a segfault when H5Pset_mdc_log_options() is called
      multiple times
    * File locking now works on Windows
    * H5Epush_ret() now requires a trailing semicolon
    * Improved performance of H5Sget_select_elem_pointlist
    * H5Fget_name_f fixed to handle correctly trailing whitespaces
      and newly allocated buffers.
    * Added new H5S functions.
    * Refactored the perform tools and removed dependencies on test
      library.
    * h5repack added help text for user-defined filters.
    * Doxygen documentation is available when configured and
      generated.
    * Fixed CVE-2018-17432 (bsc#1109564)
    * Fixed a segmentation fault
    * Detection of simple data transform function "x"
    * Fixed CVE-2020-10810 - an invalid read and memory leak when
      parsing (bsc#1167401)
    * Fixed CVE-2018-14460 (bsc#1102175)
    * Fixed CVE-2018-11206 (bsc#1093657)
      (same issue as CVE-2018-14032 (bsc#1101474))
    * Fixed CVE-2018-14033 (bsc#1101471)
      (same issue as CVE-2020-10811 (bsc#1167405))
    * Remove underscores on header file guards
    * H5FArray.java class:
    - Convert the entire byte array into a 1-d array of the
      desired type, rather than performing 1 conversion per row;
    - Use the Java Arrays method copyOfRange to grab the section
      of the array from (1) that is desired to be inserted into
      the destination array.
    * Corrected path searched by CMake find_package command
    * Corrected pkg-config compile script
    * Fixed CMake C++ compiler flags
    * Autotools clang debug optimization level change
    * Better support for libaec (open-source Szip library) in CMake
    * Refactor CMake configure for Fortran
    * Remove arbitrary warning flag groups from CMake builds
    * Reclassify CMake messages, to allow new modes and --log-level
      option
    * Fixes Autotools determination of the stat struct having an
      st_blocks field
    * Changed how h5dump and h5ls identify long double.
    * Fixed tools argument parsing.
    * Updated doxygen comments with changes for release
  - Minor rebase of patches to apply cleanly.
* Fri Jan 29 2021 Egbert Eich <eich@suse.com>
  - Fix update_so_version.sh, write so versions to file being included.
* Fri Nov 06 2020 Ana Guerrero Lopez <aguerrero@suse.com>
  - Update to version 1.10.7
    * Add metadata cache optimization to reduce skip list usage.
    * Add BEST_EFFORT value to HDF5_USE_FILE_LOCKING environment variable.
    * Add H5Pset/get_file_locking() API calls.
    * Add Mirror VFD.
      Use TCP/IP sockets to perform write-only (W/O) file I/O on a remote
      machine. Must be used in conjunction with the Splitter VFD.
    * Add Splitter VFD.
      Maintain separate R/W and W/O channels for "concurrent" file writes
      to two files using a single HDF5 file handle.
    * Fixed an assertion failure in the parallel library when collectively
    filling chunks.
    * Fortran/C++ libs: Add wrappers for H5Pset/get_file_locking() API calls.
      h5pget_file_locking_f()
      h5pset_file_locking_f()
    * Added new Fortran parameters:
      H5F_LIBVER_ERROR_F
      H5F_LIBVER_NBOUNDS_F
      H5F_LIBVER_V18_F
      H5F_LIBVER_V110_F
    * Add new Fortran API: h5pget_libver_bounds_f.
    * h5repack added options to control how external links are handled.
    * The tools library was updated by standardizing the error stack process.
    * The H5DSis_scale function was updated to return "not a dimension scale" (0)
      instead of failing (-1), when CLASS or DIMENSION_SCALE attributes are
      not written according to Dimension Scales Specification.
    * Bug Fixes:
      + Fix bug and simplify collective metadata write operation when some ranks
      have no entries to contribute.  This fixes parallel regression test
      failures with IBM SpectrumScale MPI on the Summit system at ORNL.
      + Fixed use-of-uninitialized-value error.
      Appropriate initialization of local structs was added to remove the
      use-of-uninitialized-value errors reported by MemorySanitizer.
      + Creation of dataset with optional filter.
      A fix is applied to allow the creation of a dataset in such
      situation, as specified in the user documentation.
      + Explicitly declared dlopen to use RTLD_LOCAL.
      + H5Sset_extent_none() sets the dataspace class to H5S_NO_CLASS which
      causes asserts/errors when passed to other dataspace API calls.
      + Fixed the segmentation fault when reading attributes with multiple threads
      The problem was fixed by setting the file pointer to the current opened
      file pointer when the attribute was accessed.  Similar patch up was done
      before when reading dataset with variable length string datatype.
      + Don't allocate an empty (0-dimensioned) chunked dataset's chunk
      index, until the dataset's dimensions are increased.
      + Fortan: Corrected INTERFACE INTENT(IN) to INTENT(OUT) for buf_size in
      h5fget_file_image_f.
      + h5diff fixed a command line parsing error.
      + h5diff added a command line option to ignore attributes.
      + h5diff added another level to the verbose argument to print filenames.
      + h5repack was fixed to repack the reference attributes properly.
    * For details check:
      https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.7/src/hdf5-1.10.7-RELEASE.txt
  - version 1.10.6
    * Added S3 and HDFS Virtual File Drivers (VFDs) to HDF5.
      Instructions to enable them when configuring HDF5 on Linux and Mac
      may be found at.
      https://portal.hdfgroup.org/display/HDF5/Virtual+File+Drivers+-+S3+and+HDFS.
    * Added new wrappers for H5Pset/get_create_intermediate_group()
      LinkCreatPropList::setCreateIntermediateGroup()
      LinkCreatPropList::getCreateIntermediateGroup()
    * h5repack was fixed to repack datasets with external storage
      to other types of storage.
    * Bug Fixes:
      + Improved performance when creating a large number of small datasets by
      retrieving default property values from the API context instead of doing
      skip list searches. More work is required to achieve parity with HDF5 1.8.
      + Fixed user-created data access properties not existing in the property list
      returned by H5Dget_access_plist. Thanks to Steven Varga for submitting a
      reproducer and a patch.
      + Inappropriate linking with deprecated MPI C++ libraries.
      HDF5 does not define *_SKIP_MPICXX in the public headers, so applications
      can inadvertently wind up linking to the deprecated MPI C++ wrappers.
      MPICH_SKIP_MPICXX and OMPI_SKIP_MPICXX have both been defined in H5public.h
      so this should no longer be an issue. HDF5 makes no use of the deprecated
      MPI C++ wrappers.
      + fcntl(2)-based file locking incorrectly passed the lock argument struct
      instead of a pointer to the struct, causing errors on systems where
      flock(2) is not available.
      This bug affects HDF5 1.10.0 through 1.10.5.
      fcntl(2)-based file locking now correctly passes the struct pointer.
      + Fixed a bug caused by a bad tag value when condensing object header
      messages.
      + Fixed an issue when creating a file with non-default file space info
      together with library high bound setting to H5F_LIBVER_V18.
      This was fixed by setting and checking the proper version in the file
      space info message based on the library low and high bounds when creating
      and opening the HDF5 file.
      + Fixed an issue where copying a version 1.8 dataset between files using
      H5Ocopy fails due to an incompatible fill version.
      + Fixed a bug that would cause an error or cause fill values to be
      incorrectly read from a chunked dataset using the "single chunk" index if
      + Fixed a bug that could cause an error or cause fill values to be
      incorrectly read from a dataset that was written to using H5Dwrite_chunk
      if the dataset was not closed after writing.
      + Fixed memory leak in scale offset filter.
    * For details check:
      https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.6/src/hdf5-1.10.6-RELEASE.txt
  - Security bugs fixed:
    * CVE-2018-13870: heap-based buffer over-read in the function
      H5O_link_decode in H5Olink.c  (bsc#1101493)
    * CVE-2018-13869: memcpy parameter overlap in the function
      H5O_link_decode in H5Olink.c (bsc#1101495)
    * CVE-2018-17438:  A SIGFPE signal is raised in the function
      H5D__select_io() of H5Dselect.c in the HDF HDF5 through 1.10.3
      (bsc#1109570)
      library during an attempted parse of a crafted HDF file,
      because of incorrect protection against division
      (bsc#1109570)
    * CVE-2018-17435: A heap-based buffer over-read in H5O_attr_decode()
      in H5Oattr.c in the HDF HDF5 through 1.10.3 library allows
      attackers to cause a denial of service via a crafted HDF5 file.
      (bsc#1109567)
  - Refresh patches
* Thu Jul 23 2020 Egbert Eich <eich@suse.com>
  - Add build support for gcc10 to HPC build (bsc#1174439).
* Mon Jul 20 2020 Egbert Eich <eich@suse.com>
  - Add missing openmpi4 flavors.
  - Enable build of non-HPC flavors for all non-HPC builds.
* Wed Jun 24 2020 Alin M Elena <alinm.elena@gmail.com>
  - add openmpi4 packages to build and disable build for leap
* Fri Apr 17 2020 Egbert Eich <eich@suse.com>
  - Fix .so number in baselibs.conf for libhdf5_fortran libs (boo#1169793).
* Thu Apr 02 2020 Egbert Eich <eich@suse.com>
  - Fix library link flags on pkg-config file for HPC builds (boo#1134298).
* Mon Jan 20 2020 Stefan Brüns <stefan.bruens@rwth-aachen.de>
  - Remove bogus undefines of suffix and mpi_flavor. suffix is the
    name of an RPM built-in (like expand or echo), and since RPM 4.15
    trying to alter a built-in is an error. Fixes built of serial
    flavor on Tumbleweed. See https://rpm.org/user_doc/macros.html
* Tue Dec 10 2019 Stefan Brüns <stefan.bruens@rwth-aachen.de>
  - Add compat provides for renamed hdf5-openmpi{,-devel} package,
    see https://en.opensuse.org/openSUSE:Package_dependencies
  - Fix openmpi1 package naming for SLE/Leap <= 15.1
* Thu Nov 28 2019 Egbert Eich <eich@suse.com>
  - Add HPC support for gcc8 and gcc9 (jsc#SLE-7766 & jsc#SLE-8604).
* Thu Nov 28 2019 Egbert Eich <eich@suse.com>
  - Disable openmpi1 builds for SLE/Leap > 15.1.
  - Enable openmpi3 builds for Leap and SLE > 15.1 (jsc#SLE-7773).
* Thu Oct 24 2019 Nicolas Morey-Chaisemartin <nmoreychaisemartin@suse.com>
  - openmpi has been renamed into openmpi1
* Tue Sep 10 2019 Ana Guerrero Lopez <aguerrero@suse.com>
  - Use -ffat-lto-objects to provide a proper static library.
* Tue Sep 03 2019 Ana Guerrero Lopez <aguerrero@suse.com>
  - Re-list hdf5-mpi.patch in the spec file for the sake of a avoiding
    a script rejecting the package automatically.
* Fri Aug 23 2019 Ana Guerrero Lopez <aguerrero@suse.com>
  - Update to version 1.10.5: (jsc#SLE-8501)
    * https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.5/src/hdf5-1.10.5-RELEASE.txt
  - Security bugs fixed:
    * CVE-2018-17233: A SIGFPE signal is raised in the function
    H5D__create_chunk_file_map_hyper. (bsc#1109166)
    * CVE-2018-17234: Memory leak in the H5O__chunk_deserialize()
    function in H5Ocache.c (bsc#1109167)
    * CVE-2018-17434: A SIGFPE signal is raised in function apply_filters()
    of h5repack_filters.c (bsc#1109566)
    * CVE-2018-17437: Memory leak in the H5O_dtype_decode_helper() function
    in H5Odtype.c. (bsc#1109569)
    * CVE-2018-17237: A SIGFPE signal is raised in the function
    H5D__chunk_set_info_real (bsc#1109168) (commit 4e31361d).
  - Bump fortran library soname, sonum_F from 100 to 102.
  - Adjust library installation path, use %hpc_prefix/lib64 in x86_64
    and %hpc_libdir in all other cases
  - Patches refreshed:
    * hdf5-LD_LIBRARY_PATH.patch
    * hdf5-1.8.11-abort_unknown_host_config.patch
    * PPC64LE-Fix-long-double-handling.patch
    * hdf5-Remove-timestamps-from-binaries.patch
    * Disable-phdf5-tests.patch
  - Patch disabled, upstream have changed the file that was being patched,
    while it could be ported, it's unknown if this patch is still needed.
    * hdf5-mpi.patch
  - Patch removed, merged upstream
    * 0001-Fix-return-value-in-test_libver_bounds_open.patch
* Thu Jul 04 2019 Egbert Eich <eich@suse.com>
  - Since build machine size issues do not seem to go way, make
    the %check stage optional: enable with '--with check'.
* Thu Apr 25 2019 Christian Goll <cgoll@suse.com>
  - set higher constraints for succesfull mpich tests (boo#1133222)
* Mon Apr 01 2019 normand@linux.vnet.ibm.com
  - Add _constraints to avoid transient build error ppc64le
* Sat Mar 09 2019 Stefan Brüns <stefan.bruens@rwth-aachen.de>
  - Update URL: and Source: to use https://.
* Fri Mar 01 2019 Egbert Eich <eich@suse.com>
  - Like on PPC ignore transient 'make check' failures on aarch64.
* Fri Mar 01 2019 Egbert Eich <eich@suse.com>
  - Remove ringdisabled magic as hdf5 is no longer a ring package.
    This should resolve a number of problems in the review channels
    for Factory with packages requiring hdf5 libs.
* Wed Feb 13 2019 Egbert Eich <eich@suse.com>
  - Consolidate use of openmpi1, openmpi2, openmpi3 for non-HPC builds.
* Fri Jan 25 2019 eich@suse.com
  - Remove dependency to the hdf5-devel-data file for HPC:
    Currently, there are no macro files for HPC - these files
    will have to be handled differently.
  - Re-disable all non-HPC builds for SLE.
* Mon Jan 14 2019 eich@suse.com
  - Reenable 'serial' build for SLE: this build creates hdf5-devel-data.
* Thu Jan 03 2019 eich@suse.com
  - Do not build non-HPC on SLE: This helps to save some build
    cycles.

Files

/usr/share/doc/packages/libhdf5-gnu-mvapich2-hpc
/usr/share/doc/packages/libhdf5-gnu-mvapich2-hpc/README.libhdf5_1_10_8-gnu-mvapich2-hpc


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Fabrice Bellet, Tue Aug 9 10:38:10 2022