python310-scipy_1_13_1-gnu-hpc-1.14.1-9.1 RPM for riscv64

From OpenSuSE Ports Tumbleweed for riscv64

Scipy is open-source software for mathematics, science, and
engineering. The core library is NumPy which provides convenient and
fast N-dimensional array manipulation. The SciPy library is built to
work with NumPy arrays, and provides many numerical routines such as
for numerical integration and optimization.

Provides

• python310-scipy_1_13_1-gnu-hpc
• python3.10dist(scipy)
• python310-scipy_1_13_1-gnu-hpc(riscv-64)
• python3dist(scipy)

Requires

• /bin/sh
• ld-linux-riscv64-lp64d.so.1()(64bit)
• ld-linux-riscv64-lp64d.so.1(GLIBC_2.27)(64bit)
• libc.so.6()(64bit)
• libc.so.6(GLIBC_2.27)(64bit)
• libc.so.6(GLIBC_2.32)(64bit)
• libc.so.6(GLIBC_2.34)(64bit)
• libc.so.6(GLIBC_2.38)(64bit)
• libgcc_s.so.1()(64bit)
• libgcc_s.so.1(GCC_3.0)(64bit)
• libgcc_s.so.1(GCC_3.4)(64bit)
• libgcc_s.so.1(GCC_4.0.0)(64bit)
• libgcc_s.so.1(GCC_4.2.0)(64bit)
• libgcc_s.so.1(GCC_4.5.0)(64bit)
• libgfortran.so.5()(64bit)
• libgfortran.so.5(GFORTRAN_8)(64bit)
• libm.so.6()(64bit)
• libm.so.6(GLIBC_2.27)(64bit)
• libopenblas-gnu-hpc
• libstdc++.so.6()(64bit)
• libstdc++.so.6(CXXABI_1.3)(64bit)
• libstdc++.so.6(CXXABI_1.3.11)(64bit)
• libstdc++.so.6(CXXABI_1.3.13)(64bit)
• libstdc++.so.6(CXXABI_1.3.15)(64bit)
• libstdc++.so.6(CXXABI_1.3.2)(64bit)
• libstdc++.so.6(CXXABI_1.3.3)(64bit)
• libstdc++.so.6(CXXABI_1.3.5)(64bit)
• libstdc++.so.6(CXXABI_1.3.7)(64bit)
• libstdc++.so.6(CXXABI_1.3.8)(64bit)
• libstdc++.so.6(CXXABI_1.3.9)(64bit)
• libstdc++.so.6(GLIBCXX_3.4)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.11)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.14)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.15)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.17)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.18)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.19)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.20)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.21)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.22)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.26)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.29)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.30)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.32)(64bit)
• libstdc++.so.6(GLIBCXX_3.4.9)(64bit)
• python310-numpy-gnu-hpc >= 1.18.5
• rpmlib(CompressedFileNames) <= 3.0.4-1
• rpmlib(FileDigests) <= 4.6.0-1
• rpmlib(PartialHardlinkSets) <= 4.0.4-1
• rpmlib(PayloadFilesHavePrefix) <= 4.0-1
• rpmlib(PayloadIsZstd) <= 5.4.18-1

License

BSD-3-Clause AND LGPL-2.0-or-later AND BSL-1.0

Changelog

* Tue Nov 19 2024 Dirk Müller <dmueller@suse.com>
  - relax pythran requirement
* Fri Sep 06 2024 Ben Greiner <code@bnavigator.de>
  - Add scipy-pybind11-2.13.patch gh#scipy/scipy#21199
  - Rename 21063.patch to scipy-pr21063-gcc14.patch
* Sat Aug 31 2024 Ben Greiner <code@bnavigator.de>
  - Update to SciPy 1.14.1
    * Add support for Python 3.13
    * Bug-fix release with no new features compared to 1.14.0.
* Thu Jul 11 2024 Ben Greiner <code@bnavigator.de>
  - Fix hpc build: Provide f2py with correct shebang for build-time
* Mon Jul 01 2024 John Paul Adrian Glaubitz <adrian.glaubitz@suse.com>
  - Update to 1.14.0
    [#]# Highlights of this release
    * SciPy now supports the new Accelerate library introduced in macOS 13.3, and
      has wheels built against Accelerate for macOS >=14 resulting in significant
      performance improvements for many linear algebra operations.
    * A new method, ``cobyqa``, has been added to `scipy.optimize.minimize` - this
      is an interface for COBYQA (Constrained Optimization BY Quadratic
      Approximations), a derivative-free optimization solver, designed to
      supersede COBYLA, developed by the Department of Applied Mathematics, The
      Hong Kong Polytechnic University.
    * `scipy.sparse.linalg.spsolve_triangular` is now more than an order of
      magnitude faster in many cases.
    [#]# New features
    [#] `scipy.fft` improvements
    * A new function, `scipy.fft.prev_fast_len`, has been added. This function
      finds the largest composite of FFT radices that is less than the target
      length. It is useful for discarding a minimal number of samples before FFT.
    [#]`scipy.io` improvements
    * ``wavfile`` now supports reading and writing of ``wav`` files in the RF64
      format, allowing files greater than 4 GB in size to be handled.
    [#]`scipy.constants` improvements
    * Experimental support for the array API standard has been added.
    [#]`scipy.interpolate` improvements
    * `scipy.interpolate.Akima1DInterpolator` now supports extrapolation via the
      ``extrapolate`` argument.
    [#]`scipy.optimize` improvements
    * `scipy.optimize.HessianUpdateStrategy` now also accepts square arrays for
      ``init_scale``.
    * A new method, ``cobyqa``, has been added to `scipy.optimize.minimize` - this
      is an interface for COBYQA (Constrained Optimization BY Quadratic
      Approximations), a derivative-free optimization solver, designed to
      supersede COBYLA, developed by the Department of Applied Mathematics, The
      Hong Kong Polytechnic University.
    * There are some performance improvements in
      `scipy.optimize.differential_evolution`.
    * `scipy.optimize.approx_fprime` now has linear space complexity.
    [#]`scipy.signal` improvements
    * `scipy.signal.minimum_phase` has a new argument ``half``, allowing the
      provision of a filter of the same length as the linear-phase FIR filter
      coefficients and with the same magnitude spectrum.
    [#]`scipy.sparse` improvements
    * Sparse arrays now support 1D shapes in COO, DOK and CSR formats.
      These are all the formats we currently intend to support 1D shapes.
      Other sparse array formats raise an exception for 1D input.
    * Sparse array methods min/nanmin/argmin and max analogs now return 1D arrays.
      Results are still COO format sparse arrays for min/nanmin and
      dense ``np.ndarray`` for argmin.
    * Sparse matrix and array objects improve their ``repr`` and ``str`` output.
    * A special case has been added to handle multiplying a ``dia_array`` by a
      scalar, which avoids a potentially costly conversion to CSR format.
    * `scipy.sparse.csgraph.yen` has been added, allowing usage of Yen's K-Shortest
      Paths algorithm on a directed on undirected graph.
    * Addition between DIA-format sparse arrays and matrices is now faster.
    * `scipy.sparse.linalg.spsolve_triangular` is now more than an order of
      magnitude faster in many cases.
    [#]`scipy.spatial` improvements
    * ``Rotation`` supports an alternative "scalar-first" convention of quaternion
      component ordering. It is available via the keyword argument ``scalar_first``
      of ``from_quat`` and ``as_quat`` methods.
    * Some minor performance improvements for inverting of ``Rotation`` objects.
    [#]`scipy.special` improvements
    * Added `scipy.special.log_wright_bessel`, for calculation of the logarithm of
      Wright's Bessel function.
    * The relative error in `scipy.special.hyp2f1` calculations has improved
      substantially.
    * Improved behavior of ``boxcox``, ``inv_boxcox``, ``boxcox1p``, and
      ``inv_boxcox1p`` by preventing premature overflow.
    [#]`scipy.stats` improvements
    * A new function `scipy.stats.power` can be used for simulating the power
      of a hypothesis test with respect to a specified alternative.
    * The Irwin-Hall (AKA Uniform Sum) distribution has been added as
      `scipy.stats.irwinhall`.
    * Exact p-value calculations of `scipy.stats.mannwhitneyu` are much faster
      and use less memory.
    * `scipy.stats.pearsonr` now accepts n-D arrays and computes the statistic
      along a specified ``axis``.
    * `scipy.stats.kstat`, `scipy.stats.kstatvar`, and `scipy.stats.bartlett`
      are faster at performing calculations along an axis of a large n-D array.
    [#]# Array API Standard Support
    * Experimental* support for array libraries other than NumPy has been added to
      existing sub-packages in recent versions of SciPy. Please consider testing
      these features by setting an environment variable ``SCIPY_ARRAY_API=1`` and
      providing PyTorch, JAX, or CuPy arrays as array arguments.
    * As of 1.14.0, there is support for
    * `scipy.cluster`
    * `scipy.fft`
    * `scipy.constants`
    * `scipy.special`: (select functions)
    * `scipy.special.log_ndtr`
    * `scipy.special.ndtr`
    * `scipy.special.ndtri`
    * `scipy.special.erf`
    * `scipy.special.erfc`
    * `scipy.special.i0`
    * `scipy.special.i0e`
    * `scipy.special.i1`
    * `scipy.special.i1e`
    * `scipy.special.gammaln`
    * `scipy.special.gammainc`
    * `scipy.special.gammaincc`
    * `scipy.special.logit`
    * `scipy.special.expit`
    * `scipy.special.entr`
    * `scipy.special.rel_entr`
    * `scipy.special.xlogy`
    * `scipy.special.chdtrc`
    * `scipy.stats`: (select functions)
    * `scipy.stats.describe`
    * `scipy.stats.moment`
    * `scipy.stats.skew`
    * `scipy.stats.kurtosis`
    * `scipy.stats.kstat`
    * `scipy.stats.kstatvar`
    * `scipy.stats.circmean`
    * `scipy.stats.circvar`
    * `scipy.stats.circstd`
    * `scipy.stats.entropy`
    * `scipy.stats.variation`
    * `scipy.stats.sem`
    * `scipy.stats.ttest_1samp`
    * `scipy.stats.pearsonr`
    * `scipy.stats.chisquare`
    * `scipy.stats.skewtest`
    * `scipy.stats.kurtosistest`
    * `scipy.stats.normaltest`
    * `scipy.stats.jarque_bera`
    * `scipy.stats.bartlett`
    * `scipy.stats.power_divergence`
    * `scipy.stats.monte_carlo_test`
    [#]# Deprecated features
    * `scipy.stats.gstd`, `scipy.stats.chisquare`, and
      `scipy.stats.power_divergence` have deprecated support for masked array
      input.
    * `scipy.stats.linregress` has deprecated support for specifying both samples
      in one argument; ``x`` and ``y`` are to be provided as separate arguments.
    * The ``conjtransp`` method for `scipy.sparse.dok_array` and
      `scipy.sparse.dok_matrix` has been deprecated and will be removed in SciPy
      1.16.0.
    * The option ``quadrature="trapz"`` in `scipy.integrate.quad_vec` has been
      deprecated in favour of ``quadrature="trapezoid"`` and will be removed in
      SciPy 1.16.0.
    * ``scipy.special.{comb,perm}`` have deprecated support for use of ``exact=True`` in
      conjunction with non-integral ``N`` and/or ``k``.
    [#]# Backwards incompatible changes
    * Many `scipy.stats` functions now produce a standardized warning message when
      an input sample is too small (e.g. zero size). Previously, these functions
      may have raised an error, emitted one or more less informative warnings, or
      emitted no warnings. In most cases, returned results are unchanged; in almost
      all cases the correct result is ``NaN``.
    [#]# Expired deprecations
    There is an ongoing effort to follow through on long-standing deprecations.
    The following previously deprecated features are affected:
    * Several previously deprecated methods for sparse arrays were removed:
      ``asfptype``, ``getrow``, ``getcol``, ``get_shape``, ``getmaxprint``,
      ``set_shape``, ``getnnz``, and ``getformat``. Additionally, the ``.A`` and
      ``.H`` attributes were removed.
    * ``scipy.integrate.{simps,trapz,cumtrapz}`` have been removed in favour of
      ``simpson``, ``trapezoid``, and ``cumulative_trapezoid``.
    * The ``tol`` argument of ``scipy.sparse.linalg.{bcg,bicstab,cg,cgs,gcrotmk,
      mres,lgmres,minres,qmr,tfqmr}`` has been removed in favour of ``rtol``.
      Furthermore, the default value of ``atol`` for these functions has changed
      to ``0.0``.
    * The ``restrt`` argument of `scipy.sparse.linalg.gmres` has been removed in
      favour of ``restart``.
    * The ``initial_lexsort`` argument of `scipy.stats.kendalltau` has been
      removed.
    * The ``cond`` and ``rcond`` arguments of `scipy.linalg.pinv` have been
      removed.
    * The ``even`` argument of `scipy.integrate.simpson` has been removed.
    * The ``turbo`` and ``eigvals`` arguments from ``scipy.linalg.{eigh,eigvalsh}``
      have been removed.
    * The ``legacy`` argument of `scipy.special.comb` has been removed.
    * The ``hz``/``nyq`` argument of ``signal.{firls, firwin, firwin2, remez}`` has
      been removed.
    * Objects that weren't part of the public interface but were accessible through
      deprecated submodules have been removed.
    * ``float128``, ``float96``, and object arrays now raise an error in
      `scipy.signal.medfilt` and `scipy.signal.order_filter`.
    * ``scipy.interpolate.interp2d`` has been replaced by an empty stub (to be
      removed completely in the future).
    * Coinciding with changes to function signatures (e.g. removal of a deprecated
      keyword), we had deprecated positional use of keyword arguments for the
      affected functions, which will now raise an error. Affected functions are:
    * ``sparse.linalg.{bicg, bicgstab, cg, cgs, gcrotmk, gmres, lgmres, minres,
      qmr, tfqmr}``
    * ``stats.kendalltau``
    * ``linalg.pinv``
    * ``integrate.simpson``
    * ``linalg.{eigh,eigvalsh}``
    * ``special.comb``
    * ``signal.{firls, firwin, firwin2, remez}``
    [#]# Other changes
    * SciPy now uses C17 as the C standard to build with, instead of C99. The C++
      standard remains C++17.
    * macOS Accelerate, which got a major upgrade in macOS 13.3, is now supported.
      This results in significant performance improvements for linear algebra
      operations, as well as smaller binary wheels.
    * Cross-compilation should be smoother and QEMU or similar is no longer needed
      to run the cross interpreter.
    * Experimental array API support for the JAX backend has been added to several
      parts of SciPy.
  - Cherry-pick upstream patch to fix build with GCC 14
    * https://github.com/scipy/scipy/pull/21063.patch
  - Update BuildRequires from pyproject.toml
* Sun May 26 2024 Ben Greiner <code@bnavigator.de>
  - Update to 1.13.1
    * SciPy 1.13.1 is a bug-fix release with no new features compared
      to 1.13.0.
    [#]# Issues closed
    * BUG: `scipy.ndimage.value_indices` returns empty dict for
      `intc`/`uintc` dtype on Windows
    * BUG: csr_array can no longer be initialized with 1D array
    * BUG: `TestEig.test_falker` fails on windows + MKL as well as…
    * BUG: Cannot find `OpenBLAS` on Cygwin
    * BUG: special.spherical_in: derivative at `z=0, n=1` incorrect
    * BUG: `eigh` fails for size 1 array with driver=evd
    * BUG: warning from `optimize.least_squares` for astropy with…
    * BUG: spatial: error in `Rotation.align_vectors()` with an
      infinite…
    * BUG: scipy.special.factorial2 doesn’t handle `uint32` dtypes
    * BUG: scipy.stats.wilcoxon in 1.13 fails on 2D array with nan…
    * BUG: scipy.spatial.Delaunay,
      scipy.interpolate.LinearNDInterpolator…
    * BUG: stats.yulesimon: incorrect kurtosis values
    * BUG: incorrect origin tuple handling in ndimage
      `minimum_filter`…
    * BUG: spatial: `Rotation.align_vectors()` incorrect for
      anti-parallel…
    * BUG: sparse matrix creation in 1.13 with indices not summing…
    * BUG: stats.zipf: incorrect pmf values
  - Allow pythran 0.16: Upstream's pre-emptive pin is not necessary
  - Drop scipy-pr20530-f2py_error.patch
* Sun May 12 2024 Sarah Kriesch <sarah.kriesch@opensuse.org>
  - Enable python-scipy:gnu-hpc for s390x (together with python-numpy:gnu-hpc)
* Thu May 09 2024 Sarah Kriesch <sarah.kriesch@opensuse.org>
  - Enable openblas for s390x
* Wed Apr 24 2024 Ben Greiner <code@bnavigator.de>
  - Skip another test out of numeric precision for 32-bit
  - Fix HPC _version
* Fri Apr 19 2024 Ben Greiner <code@bnavigator.de>
  - Update to 1.13.0
    [#]# Highlights of this release
    * Support for NumPy 2.0.0.
    * Interactive examples have been added to the documentation,
      allowing users to run the examples locally on embedded
      Jupyterlite notebooks in their browser.
    * Preliminary 1D array support for the COO and DOK sparse
      formats.
    * Several scipy.stats functions have gained support for
      additional axis, nan_policy, and keepdims arguments.
      scipy.stats also has several performance and accuracy
      improvements.
    [#]# New features
    * scipy.integrate improvements
    * scipy.io improvements
    * scipy.interpolate improvements
    * scipy.signal improvements
    * scipy.sparse improvements
    * scipy.spatial improvements
    * scipy.special improvements
    * scipy.stats improvements
    [#]# Deprecated features
    * Complex dtypes in PchipInterpolator and Akima1DInterpolator
      have been deprecated and will raise an error in SciPy 1.15.0.
      If you are trying to use the real components of the passed
      array, use np.real on y.
    [#]# Other changes
    * The second argument of scipy.stats.moment has been renamed to
      order while maintaining backward compatibility.
  - Release 1.12.0
    [#]# Highlights of this release
    * Experimental support for the array API standard has been added
      to part of scipy.special, and to all of scipy.fft and
      scipy.cluster. There are likely to be bugs and early feedback
      for usage with CuPy arrays, PyTorch tensors, and other array
      API compatible libraries is appreciated. Use the
      SCIPY_ARRAY_API environment variable for testing.
    * A new class, ShortTimeFFT, provides a more versatile
      implementation of the short-time Fourier transform (STFT), its
      inverse (ISTFT) as well as the (cross-) spectrogram. It
      utilizes an improved algorithm for calculating the ISTFT.
    * Several new constructors have been added for sparse arrays, and
      many operations now additionally support sparse arrays, further
      facilitating the migration from sparse matrices.
    * A large portion of the scipy.stats API now has improved support
      for handling NaN values, masked arrays, and more fine-grained
      shape-handling. The accuracy and performance of a number of
      stats methods have been improved, and a number of new
      statistical tests and distributions have been added.
    [#]# New features
    * scipy.cluster improvements
    * scipy.fft improvements
    * scipy.integrate improvements
    * scipy.interpolate improvements
    * scipy.linalg improvements
    * scipy.ndimage improvements
    * scipy.optimize improvements
    * scipy.signal improvements
    * scipy.sparse improvements
    * scipy.spatial improvements
    * scipy.special improvements
    * scipy.stats improvements
    [#]# Deprecated features
    * Error messages have been made clearer for objects that don’t
      exist in the public namespace and warnings sharpened for
      private attributes that are not supposed to be imported at all.
    * scipy.signal.cmplx_sort has been deprecated and will be removed
      in SciPy 1.15. A replacement you can use is provided in the
      deprecation message.
    * Values the argument initial of
      scipy.integrate.cumulative_trapezoid other than 0 and None are
      now deprecated.
    * scipy.stats.rvs_ratio_uniforms is deprecated in favour of
      scipy.stats.sampling.RatioUniforms
    * scipy.integrate.quadrature and scipy.integrate.romberg have
      been deprecated due to accuracy issues and interface
      shortcomings. They will be removed in SciPy 1.15. Please use
      scipy.integrate.quad instead.
    * Coinciding with upcoming changes to function signatures (e.g.
      removal of a deprecated keyword), we are deprecating positional
      use of keyword arguments for the affected functions, which will
      raise an error starting with SciPy 1.14. In some cases, this
      has delayed the originally announced removal date, to give time
      to respond to the second part of the deprecation. Affected
      functions are:
    - linalg.{eigh, eigvalsh, pinv}
    - integrate.simpson
    - signal.{firls, firwin, firwin2, remez}
    - sparse.linalg.{bicg, bicgstab, cg, cgs, gcrotmk, gmres,
      lgmres, minres, qmr, tfqmr}
    - special.comb
    - stats.kendalltau
    * All wavelet functions have been deprecated, as PyWavelets
      provides suitable implementations; affected functions are:
      signal.{daub, qmf, cascade, morlet, morlet2, ricker, cwt}
    * scipy.integrate.trapz, scipy.integrate.cumtrapz, and
      scipy.integrate.simps have been deprecated in favour of
      scipy.integrate.trapezoid,
      scipy.integrate.cumulative_trapezoid, and
      scipy.integrate.simpson respectively and will be removed in
      SciPy 1.14.
    * The tol argument of
      scipy.sparse.linalg.{bcg,bicstab,cg,cgs,gcrotmk,gmres,lgmres,
      minres,qmr,tfqmr}
      is now deprecated in favour of rtol and will be removed in
      SciPy 1.14. Furthermore, the default value of atol for these
      functions is due to change to 0.0 in SciPy 1.14.
    [#]# Expired Deprecations
    * There is an ongoing effort to follow through on long-standing
      deprecations. The following previously deprecated features are
      affected:
    * The centered keyword of scipy.stats.qmc.LatinHypercube has been
      removed. Use scrambled=False instead of centered=True.
    * scipy.stats.binom_test has been removed in favour of
      scipy.stats.binomtest.
    * In scipy.stats.iqr, the use of scale='raw' has been removed in
      favour of scale=1.
    * Functions from NumPy’s main namespace which were exposed in
      SciPy’s main namespace, such as numpy.histogram exposed by
      scipy.histogram, have been removed from SciPy’s main namespace.
      Please use the functions directly from numpy.
    [#]# Other changes
    * The arguments used to compile and link SciPy are now available
      via show_config.
  - Drop 8c96a1f742335bca283aae418763aaba62c03378.patch (merged
    upstream)
  - Add scipy-pr20530-f2py_error.patch gh#scipy/scipy#20530, used to
    find workaround for failing HPC build gh#scipy/scipy#20535
* Tue Feb 27 2024 Egbert Eich <eich@suse.com>
  - Add 8c96a1f742335bca283aae418763aaba62c03378.patch
    to fix issues with OpenBLAS 0.3.26 and later (boo#1220163).
* Mon Jan 22 2024 Daniel Garcia <daniel.garcia@suse.com>
  - Disable broken tests in s390x, gh#scipy/scipy#18878, bsc#1218608
* Tue Nov 21 2023 Steve Kowalik <steven.kowalik@suse.com>
  - Update to 1.11.4:
    * MAINT: ensure cobyla objective returns scalar
    * MAINT: fixup dep warning
    * BUG: interpolate: fix spalde with len(c) < len(t)
    * BUG: pass unused xrtol in fmin_bfgs to _minimize_bfgs
    * BUG: Regression test for lsq trf boundary error
    * BUG: lsq trf gives x=1e-10 if x0 is near a bound
    * BUG: make Bessel-roots function not hang and not skip roots
    * io/matlab: Fix loading of mat files containing fn handles when
      simplify_cells=True
    * BUG: make L-BFGS-B work with single precision gradient
    * MAINT: stats: fix NumPy DeprecationWarnings
    * BUG: sparse.linalg: Cast to intc before SuperLU
    * MAINT: Use deb_system scheme to match meson's path inference & fix aarch64
    * BUG: Fix python3.12 distutils dev.py build
    * BUG: stats: remove use of `BOOST_MATH_DECLARE_SPECIAL_FUNCTIONS`
    * MAINT: fix libquadmath licence
    * MAINT: newton, make sure x0 is an inexact type
    * MAINT: stats.CovViaEigendecomposition: fix _colorize for singular
      covariance
    * TST: fix `TestODR.test_implicit` test failure with tolerance bump
    * BUG: signal: freqz rfft grid fix
    * BUG: Support sparse arrays in scipy.sparse.csgraph.laplacian
    * MAINT: signal: Remove the cval parameter from the private function
      _pad_test.
    * BLD: Avoid absolute pathnames in .pyx files
    * BUG: Add back make_strictly_feasible to lsq trf.
    * MAINT: should not be using np.float64() on arrays
    * BUG: trust-constr Bounds exclusive
    * BUG: sparse.csgraph: Support int64 indices in traversal.pyx
    * BUG: add infeasibility checks to min_weight_full_bipartite_matching
    * DOC, MAINT: workaround for py311 docs
    * BUG: Fix typecasting problem in scipy.sparse.lil_matrix truediv
    * BUG: In least_squares make initial guess sufficiently feasible w.r.t.
      to bounds for method 'trf'
    * BUG: fix pow method for sparrays with power zero
    * BUG: set idx_dtype in sparse dia_array.tocoo
  - Drop patch intc.patch, included.
* Mon Oct 09 2023 ecsos <ecsos@opensuse.org>
  - Let it build for Leap 15.6 also.
* Thu Jul 27 2023 Markéta Machová <mmachova@suse.com>
  - Add upstream intc.patch to fix gh#scipy/scipy#18603
* Tue Jul 25 2023 Markéta Machová <mmachova@suse.com>
  - Update to 1.11.1
    * Several scipy.sparse array API improvements, including sparse.sparray,
      a new public base class distinct from the older sparse.spmatrix class,
      proper 64-bit index support, and numerous deprecations paving the way
      to a modern sparse array experience.
    * scipy.stats added tools for survival analysis, multiple hypothesis
      testing, sensitivity analysis, and working with censored data.
    * A new function was added for quasi-Monte Carlo integration, and linear
      algebra functions det and lu now accept nD-arrays.
    * An axes argument was added broadly to ndimage functions, facilitating
      analysis of stacked image data.
* Thu Jun 29 2023 Andreas Schneider <asn@cryptomilk.org>
  - Use sle15_python_module_pythons
  - Require GCC >= 8
* Fri Mar 10 2023 Martin Liška <mliska@suse.cz>
  - Fix i686 tests for GCC 13 due to:
    https://gcc.gnu.org/gcc-13/porting_to.html#excess-precision
* Sun Feb 26 2023 Ben Greiner <code@bnavigator.de>
  - Update to 1.10.1
    * bug-fix release with no new features compared to 1.10.0
  - Drop scipy-pr17717-ro-interpn.patch
* Mon Jan 16 2023 Ben Greiner <code@bnavigator.de>
  - Highlights of the 1.10.0 release
    * A new dedicated datasets submodule (scipy.datasets) has been
      added, and is now preferred over usage of scipy.misc for
      dataset retrieval.
    * A new scipy.interpolate.make_smoothing_spline function was
      added. This function constructs a smoothing cubic spline from
      noisy data, using the generalized cross-validation (GCV)
      criterion to find the tradeoff between smoothness and proximity
      to data points.
    * scipy.stats has three new distributions, two new hypothesis
      tests, three new sample statistics, a class for greater control
      over calculations involving covariance matrices, and many other
      enhancements.
  - Add scipy-pr17717-ro-interpn.patch gh#scipy/scipy#17717
    * Fixes gh#spacetelescope/gwcs#433
  - Provide scipy-datasets.tar.gz for pooch cache and tests without
    needing to download during test time.
* Wed Jan 11 2023 Guillaume GARDET <guillaume.gardet@opensuse.org>
  - Update to version 1.10.0
  - Drop upstream pacthes:
    * fix-tests.patch
    * fix-tests-pytest72.patch
    * scipy-pr17467-no-np.int0.patch
* Fri Dec 23 2022 Ben Greiner <code@bnavigator.de>
  - Add scipy-pr17467-no-np.int0.patch gh#scipy/scipy#17467
  - Move the flavored packaganame definition so that quilt does not
    fail
* Thu Dec 08 2022 Dominique Leuenberger <dimstar@opensuse.org>
  - Ensure the test flavor has a different source name than the main
    flavor: OBS uses the source names to create the dep-chain. With
    the test package having the same name as the mani flavor, all
    builds behind python-scipy are blocked until the test suite
    passed.
* Wed Dec 07 2022 Daniel Garcia <daniel.garcia@suse.com>
  - Add fix-tests-pytest72.patch to fix the tests that fails with pytest 7
    gh#scipy/scipy#17296
* Fri Dec 02 2022 Daniel Garcia <daniel.garcia@suse.com>
  - Add fix-tests.patch gh#scipy/scipy#16926#issuecomment-1287507634
* Thu Oct 20 2022 Ben Greiner <code@bnavigator.de>
  - Update to version 1.9.3
    * SciPy 1.9.3 is a bug-fix release with no new features compared
      to 1.9.2.
    * #3691: scipy.interpolate.UnivariateSpline segfault
    * #5286: BUG: multivariate_normal returns a pdf for values
      outside its…
    * #6551: BUG: stats: inconsistency in docs and behavior of gmean
      and hmean
    * #9245: running
      scipy.interpolate.tests.test_fitpack::test_bisplev_integer_overflow…
    * #12471: test_bisplev_integer_overflow: Segmentation fault (core
      dumped)
    * #13321: Bug: setting iprint=0 hides all output from
      fmin_l_bfgs_b, but…
    * #13730: `scipy.stats.mood` does not correct for ties
    * #14019: ks_2samp throws `RuntimeWarning: overflow encountered
      in double_scalars`
    * #14589: `shgo` error since scipy 1.8.0.dev0+1529.803e52d
    * #14591: Input data validation for RectSphereBivariateSpline
    * #15101: BUG: binom.pmf - RuntimeWarning: divide by zero
    * #15342: BUG: scipy.optimize.minimize: Powell’s method function
      evaluated…
    * #15964: BUG: lombscargle fails if argument is a view
    * #16211: BUG: Possible bug when using winsorize on pandas data
      instead…
    * #16459: BUG: stats.ttest_ind returns wrong p-values with
      permutations
    * #16500: odr.Model default meta value fails with __getattr__
    * #16519: BUG: Error in error message for incorrect sample
      dimension in…
    * #16527: BUG: dimension of isuppz in syevr is mistranslated
    * #16600: BUG: `KDTree`’s optional argument `eps` seems to have
      no…
    * #16656: dtype not preserved with operations on sparse arrays
    * #16751: BUG: `stats.fit` on `boltzmann` expects `bound` for
      `lambda`,…
    * #17012: BUG: Small oversight in sparse.linalg.lsmr?
    * #17020: BUG: Build failure due to problems with shebang line in
      cythoner.py
    * #17088: BUG: stats.rayleigh.fit: returns `loc` that is
      inconsistent…
    * #17104: BUG? Incorrect branch in `LAMV` / `_specfunc.lamv`
    * #17196: DOC: keepdims in stats.mode is incorrectly documented
  - Move multibuild flavor ":standard" to unflavored build
  - Test in parallel (pytest-xdist)
* Tue Oct 11 2022 Ben Greiner <code@bnavigator.de>
  - Update to version 1.9.2
    * SciPy 1.9.2 is a bug-fix release with no new features compared
      to 1.9.1.
* Sat Sep 10 2022 Ben Greiner <code@bnavigator.de>
  - Update to version 1.9.1
    * SciPy 1.9.1 is a bug-fix release with no new features compared
      to 1.9.0. Notably, some important meson build fixes are
      included.
  - Release 1.9.0
    * Full changelog at
      https://docs.scipy.org/doc/scipy/release.1.9.0.html
  - Highlights of the 1.9.0 release:
    * We have modernized our build system to use meson,
      substantially improving our build performance, and providing
      better build-time configuration and cross-compilation support,
    * Added scipy.optimize.milp, new function for mixed-integer
      linear programming,
    * Added scipy.stats.fit for fitting discrete and continuous
      distributions to data,
    * Tensor-product spline interpolation modes were added to
      scipy.interpolate.RegularGridInterpolator,
    * A new global optimizer (DIviding RECTangles algorithm)
      scipy.optimize.direct.
  - Switch to meson-python PEP517 build
* Mon Jul 18 2022 Ben Greiner <code@bnavigator.de>
  - Keep lowercase egg-info despite setuptools 60+
* Sat May 21 2022 andy great <andythe_great@pm.me>
  - Update to version 1.8.1.
    * Bug-fix release with no new features.
* Tue Apr 12 2022 Martin Liška <mliska@suse.cz>
  - With the previously added -ffloat-store, some tests that fail on i586.
    Disable them.
* Tue Apr 12 2022 Martin Liška <mliska@suse.cz>
  - Limit double floating point precision for x87, triggered by GCC 12.
    Fixes test_kolmogorov.py Fatal Python error: Floating point exception
    which is a double floating-point test.
* Mon Mar 28 2022 Ben Greiner <code@bnavigator.de>
  - Update to version 1.8.0
    * https://scipy.github.io/devdocs/release.1.8.0.html
    * SciPy 1.8.0 is the culmination of 6 months of hard work. It
      contains many new features, numerous bug-fixes, improved test
      coverage and better documentation. There have been a number of
      deprecations and API changes in this release. All users are
      encouraged to upgrade to this release, as there are a large
      number of bug-fixes and optimizations. Before upgrading, we
      recommend that users check that their own code does not use
      deprecated SciPy functionality (to do so, run your code with
      python -Wd and check for `DeprecationWarning`s).
    * A sparse array API has been added for early testing and
      feedback; this work is ongoing, and users should expect minor
      API refinements over the next few releases.
    * The sparse SVD library PROPACK is now vendored with SciPy, and
      an interface is exposed via scipy.sparse.svds with
      solver='PROPACK'. It is currently default-off due to potential
      issues on Windows that we aim to resolve in the next release,
      but can be optionally enabled at runtime for friendly testing
      with an environment variable setting of USE_PROPACK=1.
    * A new scipy.stats.sampling submodule that leverages the UNU.RAN
      C library to sample from arbitrary univariate non-uniform
      continuous and discrete distributions
    * All namespaces that were private but happened to miss
      underscores in their names have been deprecated.
    * Backwards incompatible changes
    - SciPy has raised the minimum compiler versions to GCC 6.3 on
      linux and VS2019 on windows. In particular, this means that
      SciPy may now use C99 and C++14 features. For more details
      see here.
    - The result for empty bins for scipy.stats.binned_statistic
      with the builtin 'std' metric is now nan, for consistency
      with np.std.
    - The function scipy.spatial.distance.wminkowski has been
      removed. To achieve the same results as before, please use
      the minkowski distance function with the (optional) w=
      keyword-argument for the given weight.
* Sat Jan 29 2022 Ben Greiner <code@bnavigator.de>
  - Provide empty debuginfo extraction for :test flavor
* Sun Jan 23 2022 Ben Greiner <code@bnavigator.de>
  - Update to version 1.7.3
    * 3rd bugfix release since 1.7.0
  - Highlights from the 1.7.0 release
    * A new submodule for quasi-Monte Carlo, scipy.stats.qmc, was
      added
    * The documentation design was updated to use the same
      PyData-Sphinx theme as NumPy and other ecosystem libraries.
    * We now vendor and leverage the Boost C++ library to enable
      numerous improvements for long-standing weaknesses in
      scipy.stats
    * scipy.stats has six new distributions, eight new (or
      overhauled) hypothesis tests, a new function for bootstrapping,
      a class that enables fast random variate sampling and
      percentile point function evaluation, and many other
      enhancements.
    * cdist and pdist distance calculations are faster for several
      metrics, especially weighted cases, thanks to a rewrite to a
      new C++ backend framework
    * A new class for radial basis function interpolation,
      RBFInterpolator, was added to address issues with the Rbf
      class.
  - Enable fast part of the test suite
* Mon Jul 26 2021 Andreas Schwab <schwab@suse.de>
  - Enable openblas on riscv64
* Mon May 03 2021 Arun Persaud <arun@gmx.de>
  - update to version 1.6.3:
    * Issues closed
      + #13772: Divide by zero in distance.yule
      + #13796: CI: prerelease_deps failures
      + #13890: TST: spatial rotation failure in (1.6.3) wheels repo
      (ARM64)
    * Pull requests
      + #13755: CI: fix the matplotlib warning emitted during builing
      docs
      + #13773: BUG: Divide by zero in yule dissimilarity of constant
      vectors
      + #13799: CI/MAINT: deprecated np.typeDict
      + #13819: substitute np.math.factorial with math.factorial
      + #13895: TST: add random seeds in Rotation module
* Sun Apr 04 2021 Arun Persaud <arun@gmx.de>
  - update to version 1.6.2:
    * Issues closed for 1.6.2
      + #13512: `stats.gaussian_kde.evaluate` broken on S390X
      + #13584: rotation._compute_euler_from_matrix() creates an array
      with negative...
      + #13585: Behavior change in coo_matrix when dtype=None
      + #13686: delta0 argument of scipy.odr.ODR() ignored
    * Pull requests for 1.6.2
      + #12862: REL: put upper bounds on versions of dependencies
      + #13575: BUG: fix `gaussian_kernel_estimate` on S390X
      + #13586: BUG: sparse: Create a utility function `getdata`
      + #13598: MAINT, BUG: enforce contiguous layout for output array
      in Rotation.as_euler
      + #13687: BUG: fix scipy.odr to consider given delta0 argument
* Wed Mar 03 2021 Arun Persaud <arun@gmx.de>
  - update to version 1.6.1:
    * Issues closed
      + #13072: BLD: Quadpack undefined references
      + #13241: Not enough values to unpack when passing tuple to
      `blocksize`...
      + #13329: Large sparse matrices of big integers lose information
      + #13342: fftn crashes if shape arguments are supplied as ndarrays
      + #13356: LSQBivariateSpline segmentation fault when quitting the
      Python...
      + #13358: scipy.spatial.transform.Rotation object can not be
      deepcopied...
      + #13408: Type of `has_sorted_indices` property
      + #13412: Sorting spherical Voronoi vertices leads to crash in
      area calculation
      + #13421: linear_sum_assignment - support for matrices with more
      than 2^31...
      + #13428: `stats.exponnorm.cdf` returns `nan` for small values of
      `K`...
      + #13465: KDTree.count_neighbors : 0xC0000005 error for tuple of
      different...
      + #13468: directed_hausdorff issue with shuffle
      + #13472: Failures on FutureWarnings with numpy 1.20.0 for
      lfilter, sosfilt...
      + #13565: BUG: 32-bit wheels repo test failure in optimize
    * Pull requests
      + #13318: REL: prepare for SciPy 1.6.1
      + #13344: BUG: fftpack doesn't work with ndarray shape argument
      + #13345: MAINT: Replace scipy.take with numpy.take in FFT
      function docstrings.
      + #13354: BUG: optimize: rename private functions to include
      leading underscore
      + #13387: BUG: Support big-endian platforms and big-endian WAVs
      + #13394: BUG: Fix Python crash by allocating larger array in
      LSQBivariateSpline
      + #13400: BUG: sparse: Better validation for BSR ctor
      + #13403: BUG: sparse: Propagate dtype through CSR/CSC
      constructors
      + #13414: BUG: maintain dtype of SphericalVoronoi regions
      + #13422: FIX: optimize: use npy_intp to store array dims for lsap
      + #13425: BUG: spatial: make Rotation picklable
      + #13426: BUG: `has_sorted_indices` and `has_canonical_format`
      should...
      + #13430: BUG: stats: Fix exponnorm.cdf and exponnorm.sf for small
      K
      + #13470: MAINT: silence warning generated by
      `spatial.directed_hausdorff`
      + #13473: TST: fix failures due to new FutureWarnings in NumPy
      1.21.dev0
      + #13479: MAINT: update directed_hausdorff Cython code
      + #13485: BUG: KDTree weighted count_neighbors doesn't work
      between two...
      + #13503: TST: fix `test_fortranfile_read_mixed_record` on
      big-endian...
      + #13518: DOC: document that pip >= 20.3.3 is needed for macOS 11
      + #13520: BLD: update reqs based on oldest-supported-numpy in
      pyproject.toml
      + #13567: TST, BUG: adjust tol on test_equivalence
* Sat Jan 16 2021 Benjamin Greiner <code@bnavigator.de>
  - NEP 29: Last minorversion bump deprecated Python 3.6
    https://numpy.org/neps/nep-0029-deprecation_policy.html
  - Fix hpc setup for coinstallable python3 flavors, needs
    gh#openSUSE/hpc#3
* Tue Jan 05 2021 Paolo Stivanin <info@paolostivanin.com>
  - Update to 1.6.0:
    * scipy.ndimage improvements: Fixes and ehancements to boundary extension
      modes for interpolation functions. Support for complex-valued inputs
      in many filtering and interpolation functions. New grid_mode option
      for scipy.ndimage.zoom to enable results consistent with scikit-image’s rescale.
    * scipy.optimize.linprog has fast, new methods for large, sparse
      problems from the HiGHS library.
    * scipy.stats improvements including new distributions, a new test,
      and enhancements to existing distributions and tests
    * scipy.special now has improved support for 64-bit LAPACK backend
    * scipy.odr now has support for 64-bit integer BLAS
    * scipy.odr.ODR has gained an optional overwrite argument so that
      existing files may be overwritten.
    * scipy.cluster.hierarchy.DisjointSet has been added for incremental
      connectivity queries.
    * scipy.cluster.hierarchy.dendrogram return value now also includes
      leaf color information in leaves_color_list.
    * scipy.interpolate.interp1d has a new method nearest-up, similar to
      the existing method nearest but rounds half-integers up instead of down.
    * scipy.ndimage.convolve, scipy.ndimage.correlate and their 1d counterparts
      now accept both complex-valued images and/or complex-valued filter kernels.
      All convolution-based filters also now accept complex-valued inputs
    * scipy.optimize.linprog has fast, new methods for large, sparse problems
      from the HiGHS C++ library
    * scipy.optimize.quadratic_assignment has been added for approximate solution of
      the quadratic assignment problem.
    * scipy.optimize.linear_sum_assignment now has a substantially reduced
      overhead for small cost matrix sizes
    * scipy.optimize.least_squares has improved performance when the user
      provides the jacobian as a sparse jacobian already in csr_matrix format
    * scipy.signal.gammatone has been added to design FIR or IIR filters that
      model the human auditory system.
    * scipy.signal.iircomb has been added to design IIR peaking/notching
      comb filters that can boost/attenuate a frequency from a signal.
    * scipy.signal.sosfilt performance has been improved to avoid some
      previously- observed slowdowns
    * scipy.signal.windows.taylor has been added–the Taylor window function
      is commonly used in radar digital signal processing
    * scipy.signal.gauss_spline now supports list type input for consistency
      with other related SciPy functions
    * scipy.signal.correlation_lags has been added to allow calculation of
      the lag/ displacement indices array for 1D cross-correlation.

Files

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Fabrice Bellet, Sun Dec 15 23:42:51 2024