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| Name: python3-probeinterface | Distribution: Fedora Project |
| Version: 0.2.11 | Vendor: Fedora Project |
| Release: 1.fc37 | Build date: Wed Sep 14 15:26:36 2022 |
| Group: Unspecified | Build host: buildvm-x86-20.iad2.fedoraproject.org |
| Size: 401156 | Source RPM: python-probeinterface-0.2.11-1.fc37.src.rpm |
| Packager: Fedora Project | |
| Url: https://github.com/SpikeInterface/probeinterface | |
| Summary: Handles probe layout, geometry, and wiring to device | |
A Python package to handle the layout, geometry, and wiring of silicon probes
for extracellular electrophysiology experiments.
Goals
Make a lightweight package to handle:
• probe contact geometry (both 2D and 3D layouts)
• probe shape (contour of the probe, shape of channel contact, …)
• probe wiring to device (the physical layout often doesn’t match the channel
ordering)
• combining several probes into a device with global geometry + global wiring
• exporting probe geometry data into JSON files
• loading existing probe geometry files (Neuronexus, imec, Cambridge
Neurotech…) Started here
Bonus:
• optional plotting (based on matplotlib)
• load/save geometry using common formats (PRB, CSV, NWB, …)
• handle SI length units correctly um/mm/…
Target users/project:
• spikeinterface team: integrate this into spikeextractor for channel
location
• neo team: handle array_annotations for AnalogSignal
• spikeforest team: use this package for plotting probe activity
• phy team: integrate for probe display
• spyking-circus team: handle probe with this package
• kilosort team: handle probe with this package
• tridesclous team: handle probe with this package
• open ephys team: automatically generate channel map configuration files
MIT
* Wed Sep 14 2022 Benjamin A. Beasley <code@musicinmybrain.net> 0.2.11-1 - Update to 0.2.11 (close RHBZ#2126799) * Thu Sep 01 2022 Benjamin A. Beasley <code@musicinmybrain.net> 0.2.10-1 - Update to 0.2.10 (close RHBZ#2123300) * Fri Jul 22 2022 Fedora Release Engineering <releng@fedoraproject.org> 0.2.9-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild * Wed Jun 15 2022 Python Maint <python-maint@redhat.com> 0.2.9-2 - Rebuilt for Python 3.11 * Fri Apr 15 2022 Benjamin A. Beasley <code@musicinmybrain.net> 0.2.9-1 - Update to 0.2.9 (close RHBZ#2075767) * Wed Mar 23 2022 Benjamin A. Beasley <code@musicinmybrain.net> 0.2.8-1 - Update to 0.2.8 (close RHBZ#2067101) * Tue Mar 01 2022 Benjamin A. Beasley <code@musicinmybrain.net> 0.2.7-1 - Update to 0.2.7 (close RHBZ#2059621) * Fri Jan 21 2022 Fedora Release Engineering <releng@fedoraproject.org> 0.2.6-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_36_Mass_Rebuild * Tue Dec 28 2021 Benjamin A. Beasley <code@musicinmybrain.net> 0.2.6-1 - Initial package (close RHBZ#2012917)
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