Index index by Group index by Distribution index by Vendor index by creation date index by Name Mirrors Help Search

bfast-0.7.0a-23.fc32 RPM for x86_64

From Fedora 32 for x86_64 / b

Name: bfast Distribution: Fedora Project
Version: 0.7.0a Vendor: Fedora Project
Release: 23.fc32 Build date: Tue Jan 28 13:57:15 2020
Group: Unspecified Build host: buildvm-29.phx2.fedoraproject.org
Size: 2480466 Source RPM: bfast-0.7.0a-23.fc32.src.rpm
Packager: Fedora Project
Url: https://github.com/nh13/BFAST
Summary: Blat-like Fast Accurate Search Tool
BFAST facilitates the fast and accurate mapping of short reads to
reference sequences.  Some advantages of BFAST include:

Speed: enables billions of short reads to be mapped quickly.

Accuracy: A priori probabilities for mapping reads with defined set of variants.

An easy way to measurably tune accuracy at the expense of speed.

Specifically, BFAST was designed to facilitate whole-genome
resequencing, where mapping billions of short reads with variants is
of utmost importance.

BFAST supports both Illumina and ABI SOLiD data, as well as any other
Next-Generation Sequencing Technology (454, Helicos), with particular
emphasis on sensitivity towards errors, SNPs and especially
indels. Other algorithms take short-cuts by ignoring errors, certain
types of variants (indels), and even require further alignment, all to
be the "fastest" (but still not complete). BFAST is able to be tuned
to find variants regardless of the error-rate, polymorphism rate, or
other factors.

Provides

Requires

License

GPLv2 and MIT

Changelog

* Tue Jan 28 2020 Fedora Release Engineering <releng@fedoraproject.org> - 0.7.0a-23
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild
* Wed Jul 24 2019 Fedora Release Engineering <releng@fedoraproject.org> - 0.7.0a-22
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_31_Mass_Rebuild
* Mon Jul 15 2019 Petr Pisar <ppisar@redhat.com> - 0.7.0a-21
  - Regenerate a build script (bug #1674691)
  - Upstream moved to <https://github.com/nh13/BFAST>
* Thu Jan 31 2019 Fedora Release Engineering <releng@fedoraproject.org> - 0.7.0a-20
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_30_Mass_Rebuild
* Thu Jul 12 2018 Fedora Release Engineering <releng@fedoraproject.org> - 0.7.0a-19
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_29_Mass_Rebuild
* Wed Feb 07 2018 Fedora Release Engineering <releng@fedoraproject.org> - 0.7.0a-18
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_28_Mass_Rebuild

Files

/usr/bin/balignmentscoredistribution
/usr/bin/balignsim
/usr/bin/bevalsim
/usr/bin/bfast
/usr/bin/bfast.resubmit.pl
/usr/bin/bfast.submit.pl
/usr/bin/bgeneratereads
/usr/bin/bindexdist
/usr/bin/bindexhist
/usr/bin/bmfmerge
/usr/bin/brepeat
/usr/bin/btestindexes
/usr/bin/ill2fastq.pl
/usr/bin/solid2fastq
/usr/lib/.build-id
/usr/lib/.build-id/2d
/usr/lib/.build-id/2d/4cc07a04aa57d60a3dba7f06b9e27f20ed2c96
/usr/lib/.build-id/34
/usr/lib/.build-id/34/2648fbf112eadf142dfc5856a76da3c3de60d1
/usr/lib/.build-id/36
/usr/lib/.build-id/36/242c2d636aaa9f2dce530fb9afaa4b6a2a051f
/usr/lib/.build-id/3a
/usr/lib/.build-id/3a/c9cc9d9e59503096f5a8efb87f945570cb15e5
/usr/lib/.build-id/4a
/usr/lib/.build-id/4a/5dc6d48736ab9ab3f339efe2857b10b558b44c
/usr/lib/.build-id/53
/usr/lib/.build-id/53/36c75cd9ef45bd2fc70ddd3cb9bb5bcbe960c5
/usr/lib/.build-id/63
/usr/lib/.build-id/63/6fc2b4c2c83933b4bac19a5d1547ba6cc6a22f
/usr/lib/.build-id/67
/usr/lib/.build-id/67/49f7aea90cabafd58ffe46940f9c0f45d636f6
/usr/lib/.build-id/7a
/usr/lib/.build-id/7a/43f6a2672f094b74d1ca7738617e012ba714cd
/usr/lib/.build-id/9c
/usr/lib/.build-id/9c/7f1b5f185ee55323e982697d949e72031e74e6
/usr/lib/.build-id/c7
/usr/lib/.build-id/c7/39ee9b9d69f4f4bb603889b76d858b301750b8
/usr/share/doc/bfast
/usr/share/doc/bfast/AUTHORS
/usr/share/doc/bfast/ChangeLog
/usr/share/doc/bfast/NEWS
/usr/share/doc/bfast/README
/usr/share/doc/bfast/bfast-book.pdf
/usr/share/licenses/bfast
/usr/share/licenses/bfast/LICENSE


Generated by rpm2html 1.8.1

Fabrice Bellet, Sat Oct 9 16:45:41 2021