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samtools-0.1.19-7.el7 RPM for ppc64

From EPEL 7 for ppc64 / Packages / s

Name: samtools Distribution: Fedora Project
Version: 0.1.19 Vendor: Fedora Project
Release: 7.el7 Build date: Sat May 30 09:35:27 2015
Group: Applications/Engineering Build host: buildppc-02.phx2.fedoraproject.org
Size: 1541957 Source RPM: samtools-0.1.19-7.el7.src.rpm
Packager: Fedora Project
Url: http://samtools.sourceforge.net/
Summary: Tools for nucleotide sequence alignments in the SAM format
 
SAM (Sequence Alignment/Map) is a flexible generic format for storing
nucleotide sequence alignment.
SAM Tools provide various utilities for manipulating alignments in the
SAM format, including sorting, merging, indexing and generating
alignments in a per-position format.

Provides

Requires

License

MIT

Changelog

* Fri May 29 2015 Tom Callaway <spot@fedoraproject.org> - 0.1.19-7
  - add fixes from Rsamtools
* Mon Aug 18 2014 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.1.19-6
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_21_22_Mass_Rebuild
* Mon Jun 09 2014 Tom Callaway <spot@fedoraproject.org> - 0.1.19-5
  - add faidx_fetch_seq2 function from rsamtools
* Sun Jun 08 2014 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.1.19-4
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_21_Mass_Rebuild
* Sun Aug 04 2013 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.1.19-3
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_20_Mass_Rebuild
* Wed Jul 17 2013 Petr Pisar <ppisar@redhat.com> - 0.1.19-2
  - Perl 5.18 rebuild
* Thu Apr 11 2013 Tom Callaway <spot@fedoraproject.org> - 0.1.19-1
  - update to 0.1.19
* Thu Feb 14 2013 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.1.18-5
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_19_Mass_Rebuild
* Sat Jul 21 2012 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.1.18-4
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_18_Mass_Rebuild
* Sat Jan 14 2012 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.1.18-3
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_17_Mass_Rebuild
* Wed Oct 26 2011 Adam Huffman <verdurin@fedoraproject.org> - 0.1.18-2
  - make sure new seqtk tool included
* Tue Sep 06 2011 Rasmus Ory Nielsen <ron@ron.dk> - 0.1.18-1
  - Updated to 0.1.18
* Tue May 10 2011 Rasmus Ory Nielsen <ron@ron.dk> - 0.1.16-1
  - Updated to 0.1.16
* Mon Apr 11 2011 Rasmus Ory Nielsen <ron@ron.dk> - 0.1.15-1
  - Updated to 0.1.15
* Wed Mar 23 2011 Rasmus Ory Nielsen <ron@ron.dk> - 0.1.14-1
  - Updated to 0.1.14
  - Build shared library instead of static
* Wed Feb 09 2011 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.1.12a-3
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_15_Mass_Rebuild
* Mon Dec 06 2010 Rasmus Ory Nielsen <ron@ron.dk> - 0.1.12a-2
  - Fixed header files directory ownership
  - Added missing header files
* Mon Dec 06 2010 Rasmus Ory Nielsen <ron@ron.dk> - 0.1.12a-1
  - Updated to 0.1.12a
* Tue Nov 23 2010 Adam Huffman <bloch@verdurin.com> - 0.1.8-4
  - cleanup man page handling
* Sun Oct 10 2010 Adam Huffman <bloch@verdurin.com> - 0.1.8-4
  - fix attributes for devel subpackage
  - fix library location
* Sun Sep 26 2010 Adam Huffman <bloch@verdurin.com> - 0.1.8-3
  - put headers and library in standard locations
* Mon Sep 06 2010 Adam Huffman <bloch@verdurin.com> - 0.1.8-2
  - merge Rasmus' latest changes (0.1.8 update)
  - include bam.h and libbam.a for Bio-SamTools compilation
  - move bam.h and libbam.a to single directory
  - put bgzf.h, khash.h and faidx.h in the same place
  - add -fPIC to CFLAGS to make Bio-SamTools happy
  - add virtual Provide as per guidelines
* Tue Aug 17 2010 Rasmus Ory Nielsen <ron@ron.dk> - 0.1.8-1
  - Updated to 0.1.8.
* Mon Nov 30 2009 Rasmus Ory Nielsen <ron@ron.dk> - 0.1.7a-1
  - Updated to 0.1.7a.
* Sun Jul 26 2009 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.1.5c-4
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_12_Mass_Rebuild
* Sun Jul 12 2009 Rasmus Ory Nielsen <ron@ron.dk> - 0.1.5c-3
  - Specfile cleanup.
* Sat Jul 11 2009 Rasmus Ory Nielsen <ron@ron.dk> - 0.1.5c-2
  - Fixed manpage location.
  - Make sure optflags is passed to the makefiles.
* Sat Jul 11 2009 Rasmus Ory Nielsen <ron@ron.dk> - 0.1.5c-1
  - Initial build.

Files

/usr/bin/bcftools
/usr/bin/blast2sam.pl
/usr/bin/bowtie2sam.pl
/usr/bin/export2sam.pl
/usr/bin/interpolate_sam.pl
/usr/bin/maq2sam-long
/usr/bin/maq2sam-short
/usr/bin/md5fa
/usr/bin/md5sum-lite
/usr/bin/novo2sam.pl
/usr/bin/psl2sam.pl
/usr/bin/razip
/usr/bin/sam2vcf.pl
/usr/bin/samtools
/usr/bin/samtools.pl
/usr/bin/soap2sam.pl
/usr/bin/varfilter.py
/usr/bin/vcfutils.pl
/usr/bin/wgsim
/usr/bin/wgsim_eval.pl
/usr/bin/zoom2sam.pl
/usr/share/doc/samtools-0.1.19
/usr/share/doc/samtools-0.1.19/AUTHORS
/usr/share/doc/samtools-0.1.19/COPYING
/usr/share/doc/samtools-0.1.19/ChangeLog.old
/usr/share/doc/samtools-0.1.19/INSTALL
/usr/share/doc/samtools-0.1.19/NEWS
/usr/share/doc/samtools-0.1.19/README.bcftools
/usr/share/doc/samtools-0.1.19/bcf.tex
/usr/share/doc/samtools-0.1.19/examples
/usr/share/doc/samtools-0.1.19/examples/00README.txt
/usr/share/doc/samtools-0.1.19/examples/Makefile
/usr/share/doc/samtools-0.1.19/examples/bam2bed.c
/usr/share/doc/samtools-0.1.19/examples/calDepth.c
/usr/share/doc/samtools-0.1.19/examples/chk_indel.c
/usr/share/doc/samtools-0.1.19/examples/ex1.fa
/usr/share/doc/samtools-0.1.19/examples/ex1.sam.gz
/usr/share/doc/samtools-0.1.19/examples/toy.fa
/usr/share/doc/samtools-0.1.19/examples/toy.sam
/usr/share/man/man1/samtools.1.gz

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Fabrice Bellet, Tue Apr 9 13:55:58 2024