Package Bio :: Package Ais :: Class Immune
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Class Immune


friendly should be an instance of Align. It should contain the set of protected sequences.
Method Summary
  __init__(self, friendly_seq, alphabet, tuner_dict, hot_mode)
  build_align(self, seq)
  compute_accum_weight(self)
  create_lymphocyte(self)
  found_antigen(self, detector, mystery_sequence)
  guess_gaps(self, seq)
Fill gaps with random selction from alphabet
  lazy_auto_immune_check(self, seq)
  lymphocyte_factory(self)
  pick_a_lymphocyte(self)
Random selection biased by weight
  random_test(self, mystery_sequence)
A single test probably won't catch a corrupted sequence.
  scramble(self, seq)
Substitute residues in sequence at random.
  search_accum_weight(self, t)
  select_at_random(self, items)
  set_defaults(self)
  tune(self)

Method Details

guess_gaps(self, seq)

Fill gaps with random selction from alphabet

pick_a_lymphocyte(self)

Random selection biased by weight

random_test(self, mystery_sequence)

A single test probably won't catch a corrupted sequence. Lots of tests are required

scramble(self, seq)

Substitute residues in sequence at random.

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