Package Bio :: Package Blast
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Package Bio.Blast

Code for dealing with BLAST programs and output.
Submodules
  • Applications: Definitions for interacting with Blast related applications.
  • NCBIStandalone: This module provides code to work with the standalone version of BLAST, either blastall or blastpgp, provided by the NCBI.
  • NCBIWWW: This module provides code to work with the WWW version of BLAST provided by the NCBI.
  • NCBIXML: This module provides code to work with the BLAST XML output following the DTD available on the NCBI FTP ftp://ftp.ncbi.nlm.nih.gov/blast/documents/xml/NCBI_BlastOutput.dtd Classes: BlastParser Parses XML output from BLAST.
  • ParseBlastTable
  • Record: Record classes to hold BLAST output.

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