Trees | Index | Help |
---|
Package Bio :: Package HMM :: Module DynamicProgramming :: Class LogDPAlgorithms |
|
AbstractDPAlgorithms
--+
|
LogDPAlgorithms
Implement forward and backward algorithms using a log approach.
This uses the approach of calculating the sum of log probabilities using a lookup table for common values.
XXX This is not implemented yet!Method Summary | |
---|---|
Initialize to calculate foward and backward probabilities. | |
Inherited from AbstractDPAlgorithms | |
Calculate sequence probability using the backward algorithm. | |
Calculate sequence probability using the forward algorithm. |
Method Details |
---|
__init__(self,
markov_model,
sequence)
|
Trees | Index | Help |
---|
Generated by Epydoc 2.1 on Mon Aug 27 16:13:10 2007 | http://epydoc.sf.net |