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Package Bio :: Module utils |
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Function Summary | |
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back_transcribe(seq)
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back_translate(seq,
id)
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count_monomers(seq)
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percent_monomers(seq)
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given an amino-acid sequence, return it in reduced alphabet form based on the letter-translation table passed. | |
sum(seq,
table,
zero)
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sum_2ple(seq,
table,
zero)
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total_weight(seq,
weight_table)
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total_weight_range(seq,
weight_table)
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transcribe(seq)
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translate(seq,
id)
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translate_to_stop(seq,
id)
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given a sequence with gap encoding, return the ungapped sequence | |
verify_alphabet(seq)
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Function Details |
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reduce_sequence(seq, reduction_table, new_alphabet=None)given an amino-acid sequence, return it in reduced alphabet form based on the letter-translation table passed. Some "standard" tables are in Alphabet.Reduced. seq: a Seq.Seq type sequence reduction_table: a dictionary whose keys are the "from" alphabet, and values are the "to" alphabet |
ungap(seq)given a sequence with gap encoding, return the ungapped sequence |
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