Package Bio :: Package config :: Module DBRegistry
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Module Bio.config.DBRegistry

Implements Registry to access databases. These objects access databases using a dictionary-like interface, where the key is the ID of the thing to look up, and the value returned is the data associated with the key.

Classes: DBRegistry Accesses databases with a dictionary-like interface. DBObject Base class for Registry objects for databases. DBGroup Groups DBObjects.

CGIDB Accesses CGI databases. EUtilsDB Accesses NCBI using EUtils. BioSQLDB Accesses a BioSQL database. BioCorbaDB Accesses a BioCorba database. IndexedFileDB Accesses a Mindy Indexed file.
Classes
BioCorbaDB Represent a BioCorba BioSequenceCollection for SeqRecord objects.
BioSQLDB Represent a BioSQL-style database to retrieve SeqRecord objects.
CGIDB This class implements DBObject for accessing CGI databases.
DBGroup Groups DBObjects that return the same kind of data.
DBObject This is a base class for dictionary-like interfaces to databases.
DBRegistry This implements a dictionary-like interface to databases.
EUtilsDB Implement DBObject for accessing EUtils databases at NCBI.
IndexedFileDB Return SeqRecord objects from an indexed file.
TextLikeMixin Mixin class with useful functionality for retrival of text files.

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