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Package Bio :: Package builders :: Package SeqRecord :: Module sequence :: Class BuildSeqRecord |
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ContentHandler
--+ |DispatchHandler
--+ |Dispatcher
--+ | BuildSeqRecord
FixDocumentBuilder
Method Summary | |
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__init__(self)
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add_dbid(self,
text,
attrs)
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Store all id cross references. | |
Handle setting name and id attributes from the dbxref ids. | |
add_description(self,
text)
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add_features(self,
features)
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add_sequence(self,
(alphabet,
seq,
gapchar,
stopchar))
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end_record(self,
tag)
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start_record(self,
tag,
attrs)
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Inherited from Dispatcher | |
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Receive notification of the end of a document. | |
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Receive notification of the beginning of a document. | |
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Inherited from ContentHandler | |
Signals the end of an element in namespace mode. | |
End the scope of a prefix-URI mapping. | |
Receive notification of ignorable whitespace in element content. | |
Receive notification of a processing instruction. | |
Called by the parser to give the application a locator for locating the origin of document events. | |
Receive notification of a skipped entity. | |
Signals the start of an element in namespace mode. | |
Begin the scope of a prefix-URI Namespace mapping. | |
Inherited from DispatchHandler | |
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Method Details |
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add_dbxref(self, dbname_style, dbname, idtype, dbid, negate)Store all id cross references. |
add_dbxref_dbids(self, dbname_style, dbname, idtype, dbid, negate)Handle setting name and id attributes from the dbxref ids. Likely we'll either have a dbid or dbxref dbids to use. We default to using the dbid if it exists. |
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